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Test ID: RENCP Hereditary Renal Cancer Panel, Varies


Ordering Guidance


Customization of this panel and single gene analysis for any gene present on this panel are available. For more information see CGPH / Custom Gene Panel, Hereditary, Next-Generation Sequencing, Varies.

 

Targeted testing for familial variants (also called site-specific or known mutations testing) is available for the genes on this panel. See FMTT / Familial Variant, Targeted Testing, Varies. To obtain more information about this testing option, call 800-533-1710.

 

Testing minors for adult-onset predisposition syndromes is discouraged by the American Academy of Pediatrics, the American College of Medical Genetics and Genomics, and the National Society of Genetic Counselors.



Shipping Instructions


Specimen preferred to arrive within 96 hours of collection.



Specimen Required


Patient Preparation: A previous bone marrow transplant from an allogenic donor will interfere with testing. For instructions for testing patients who have received a bone marrow transplant, call 800-533-1710.

Specimen Type: Whole blood

Container/Tube:

Preferred: Lavender top (EDTA) or yellow top (ACD)

Acceptable: Any anticoagulant

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix blood.

2. Send whole blood specimen in original tube. Do not aliquot.

Specimen Stability Information: Ambient (preferred) 4 days/Refrigerated

Additional Information: To ensure minimum volume and concentration of DNA is met, the preferred volume of blood must be submitted. Testing may be canceled if DNA requirements are inadequate.


Forms

1. New York Clients-Informed consent is required. Document on the request form or electronic order that a copy is on file. The following documents are available:

-Informed Consent for Genetic Testing (T576)

-Informed Consent for Genetic Testing-Spanish (T826)

2. Molecular Genetics: Inherited Cancer Syndromes Patient Information (T519)

3. If not ordering electronically, complete, print, and send a Oncology Test Request (T729) with the specimen.

Useful For

Evaluating patients with a personal or family history suggestive of a hereditary renal cancer syndrome

 

Establishing a diagnosis of a hereditary renal cancer syndrome allowing for targeted cancer surveillance based on associated risks

 

Identifying genetic variants associated with increased risk for renal and/or other cancers, allowing for predictive testing and appropriate screening of at-risk family members

Genetics Test Information

This test utilizes next-generation sequencing to detect single nucleotide and copy number variants in 19 genes associated with hereditary renal cancer syndromes: BAP1, DICER1, FH, FLCN, MET, MITF (c.952G>A p.E318K variant only), PTEN (including promoter), SDHA, SDHAF2, SDHB, SDHC, SDHD, SMARCA4, SMARCB1, TMEM127, TP53, TSC1, TSC2, and VHL. For more information see Method Description and Targeted Genes and Methodology Details for Hereditary Renal Cancer Panel.

 

Identification of a disease-causing variant may assist with diagnosis, prognosis, clinical management, familial screening, and genetic counseling for hereditary renal cancer.

Method Name

Sequence Capture and Targeted Next-Generation Sequencing (NGS) followed by Polymerase Chain Reaction (PCR) and Sanger Sequencing

Reporting Name

Hereditary Renal Cancer Panel

Specimen Type

Varies

Specimen Minimum Volume

1 mL

Specimen Stability Information

Specimen Type Temperature Time Special Container
Varies Varies

Clinical Information

Lifetime risk for developing renal cancer in the United States is approximately 1% to 2%.(1) Of these cases, about 3% to 5% are associated with an underlying hereditary predisposition.(2,3) Suspicion for a hereditary association may be raised in cases of early age of onset, multifocal/bilateral lesions, or a family or personal history of renal or other tumors.

 

Clear cell type renal cancers can be seen in individuals with disease-causing variants in BAP1, PTEN, and VHL. BAP1 variants also associated with an increased risk for melanomas, mesothelioma, and epithelioid atypical Spitz tumors. PTEN variants are also associated with significantly increased risk for breast, thyroid, and uterine cancer. VHL variants are associated with von Hippel Lindau syndrome and are associated with an increased risk for several types of tumors, including hemangioblastomas, pancreatic cysts, neuroendocrine tumors, endolymphatic sac, and epididymal tumors.(4)

 

Risk for renal cancer is also increased by disease-causing variants in the succinate dehydrogenase-associated genes: SDHAF2, SDHA, SDHB, SDHC and SDHD.(5-8)

 

Variants in the SDH genes are also associated with an increased risk for paragangliomas and pheochromocytomas.

 

Hereditary papillary renal cancer may be caused by variants in the MET gene, while alterations in the FH gene cause a syndrome called hereditary leiomyomatosis and renal cell cancer (HLRCC). Individuals with HLRCC also have an increased risk of developing cutaneous or uterine leiomyomas.(2)

 

Birt-Hogg-Dube syndrome is caused by disease-causing variants in the FLCN gene. Individuals with Birt-Hogg-Dube syndrome have an increased risk for oncocytic or chromophobe renal cancers and often exhibit other features such as fibrofolliculomas, lung cysts, and pneumothorax.

 

Angiomyolipomas and morphologically heterogenous renal tumors may be seen in individuals with tuberous sclerosis complex (TS), caused by variants in the TSC1 or TSC2 genes.(9) Individuals with TS are also at increased risk for subependymal giant cell astrocytomas and may exhibit several other features, including facial angiofibromas, lymphangioleiomyomatosis, cardiac rhabdomyomas, hypomelanocytic macules, shagreen patches, and ungual/periungual fibromas.(10)

 

Disease-causing DICER1 variants are associated with an increased risk of developing kidney tumors called cystic nephromas, although some individuals with DICER1 variants have developed high-grade renal sarcomas.(11) DICER1 tumor predisposition syndrome is also characterized by risk for pleuropulmonary blastoma, pulmonary cysts, thyroid tumors, and ovarian tumors, in addition to other features.(12)

 

A specific variant within the MITF gene, p.E318K, is associated with increased risk for melanoma as well as renal cancer.(13)

 

Lastly, disease-causing variants within the SMARCA4 and SMARCB1 genes cause a hereditary cancer syndrome called rhabdoid tumor predisposition syndrome, characterized by a significantly increased risk for aggressive, childhood-onset rhabdoid tumors, including rhabdoid tumors of the kidney.(14)

 

The National Comprehensive Cancer Network and the American Cancer Society provide recommendations regarding the medical management of individuals with hereditary renal cancer syndromes.(15)

Reference Values

An interpretive report will be provided.

Interpretation

All detected variants are evaluated according to American College of Medical Genetics and Genomics recommendations.(16) Variants are classified based on known, predicted, or possible pathogenicity and reported with interpretive comments detailing their potential or known significance.

Clinical Reference

1. American Cancer Society. Cancer Facts and Figures 2020. American Cancer Society; 2020. Accessed November 7, 2022. Available at www.cancer.org/research/cancer-facts-statistics/all-cancer-facts-figures/cancer-facts-figures-2020.html

2. Haas NB, Nathanson KL. Hereditary renal cancer syndromes. Adv Chronic Kidney Dis. 2014;21(1):81-90

3. Carlo MI, Hakimi AA, Stewart GD, Bratslavsky G, et al. Familial kidney cancer: Implications of new syndromes and molecular insights. Eur Urol. 2019;76(6):754-764

4. Rednam SP, Erez A, Druker H, et al. Von Hippel-Lindau and hereditary pheochromocytoma/paraganglioma syndromes: Clinical features, genetics, and surveillance recommendations in childhood. Clin Cancer Res. 2017;23(12):e68-e75

5. Gill AJ, Hes O, Papathomas T, et al. Succinate dehydrogenase (SDH)-deficient renal carcinoma: a morphologically distinct entity: a clinicopathologic series of 36 tumors from 27 patients. Am J Surg Pathol. 2014;38(12):1588-1602

6. Gill AJ. Succinate dehydrogenase (SDH)-deficient neoplasia. Histopathology. 2018;72(1):106-116

7. Lenders JW, Duh QY, Eisenhofer G, et al. Endocrine Society: Pheochromocytoma and paraganglioma: an endocrine society clinical practice guideline. J Clin Endocrinol Metab. 2014;99(6):1915-1942

8. Benn DE, Gimenez-Roqueplo AP, Reilly JR et al. Clinical presentation and penetrance of pheochromocytoma/paraganglioma syndromes. J Clin Endocrinol Metab. 2006;91(3):827-836. doi:10.1210/jc.2005-1862

9. Gupta S, Jimenez RE, Herrera-Hernandez L, et al. Renal neoplasia in tuberous sclerosis: a study of 41 patients. Mayo Clin Proc. 2021;96(6):1470-1489

10. Henske EP, Jozwiak S, Kingswood JC, et al. Tuberous sclerosis complex. Nat Rev Dis Primers. 2016;2:16035

11. Doros LA, Rossi CT, Yang J, et al. DICER1 mutations in childhood cystic nephroma and its relationship to DICER1-renal sarcoma. Mod Pathol. 2014;27(9):1267-1280

12. Schultz KAP, Stewart DR, Kamihara J, et al. DICER1 tumor predisposition. In: Adam MP, Everman DB, Mirzaa GM, et al, eds: GeneReviews [Internet]. University of Washington, Seattle; 2014. Updated April 30, 2020. Accessed November 7, 2022. Available at www.ncbi.nlm.nih.gov/books/NBK196157/

13. Bertolotto C, Lesueur F, Giuliano S, et al. A SUMOylation-defective MITF germline mutation predisposes to melanoma and renal carcinoma. Nature. 2011;480(7375):94-98. doi:10.1038/nature10539. Erratum in: Nature. 2016 Mar 3;531(7592):126

14. Nemes K, Bens S, Bourdeaut F, et al. Rhabdoid tumor predisposition syndrome. In: Adam MP, Everman DB, Mirzaa GM, et al, eds. GeneReviews [Internet]. University of Washington, Seattle; 2017. Updated May 12, 2022 Accessed November 7, 2022. Available at www.ncbi.nlm.nih.gov/books/NBK469816/

15. Motzer RJ, Jonasch E, Boyle S, et al. NCCN guidelines insights: kidney cancer, version 1.2021. J Natl Compr Canc Netw. 2020;18(9):1160-1170

16. Richards S, Aziz N, Bale S, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405-424

Day(s) Performed

Varies

Report Available

14 to 21 days

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

81405 x 3

81321

81406 x 2

81404 x 2

81351

81407

81479

81479 (if appropriate for government payers)

LOINC Code Information

Test ID Test Order Name Order LOINC Value
RENCP Hereditary Renal Cancer Panel In Process

 

Result ID Test Result Name Result LOINC Value
614827 Test Description 62364-5
614828 Specimen 31208-2
614829 Source 31208-2
614830 Result Summary 50397-9
614831 Result 82939-0
614832 Interpretation 69047-9
614833 Resources 99622-3
614834 Additional Information 48767-8
614835 Method 85069-3
614836 Genes Analyzed 48018-6
614837 Disclaimer 62364-5
614838 Released By 18771-6
Mayo Clinic Laboratories | Genetics and Genomics Additional Information:

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