Sign in →

Test ID: LQTSG Long QT Syndrome Gene Panel, Varies


Ordering Guidance


This test is intended for genetic screening for and diagnosis of long QT syndrome.

 

For Brugada syndrome genetic testing, order SCN5A / Brugada Syndrome Multi-Gene Panel, Blood.

 

For comprehensive inherited cardiac arrhythmia genetic testing, order CARGG / Comprehensive Arrhythmia Gene Panel, Varies.

 

Customization of this panel and single gene analysis for any gene present on this panel are available. For more information see CGPH / Custom Gene Panel, Hereditary, Next-Generation Sequencing, Varies.

 

Targeted testing for familial variants (also called site-specific or known mutations testing) is available for the genes on this panel. See FMTT / Familial Variant, Targeted Testing, Varies. To obtain more information about this testing option, call 800-533-1710.



Shipping Instructions


Specimen preferred to arrive within 96 hours of collection.



Necessary Information


Prior Authorization is available, but not required, for this test. If proceeding with the prior authorization process, submit the required form with the specimen.



Specimen Required


Patient Preparation: A previous bone marrow transplant from an allogenic donor will interfere with testing. Call 800-533-1710 for instructions for testing patients who have received a bone marrow transplant.

  

Specimen Type: Whole blood

Container/Tube:

Preferred: Lavender top (EDTA) or yellow top (ACD)

Acceptable: Any anticoagulant

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix blood

2. Send whole blood specimen in original tube. Do not aliquot.

Specimen Stability Information: Ambient (preferred)/Refrigerated


Forms

. New York Clients-Informed consent is required. Document on the request form or electronic order that a copy is on file. The following documents are available:

-Informed Consent for Genetic Testing (T576)

-Informed Consent for Genetic Testing (Spanish) (T826)

2. Hereditary Cardiomyopathies and Arrhythmias Patient Information

3. Long QT Syndrome Gene Panel (LQTSG) Prior Authorization Ordering Instructions

4. If not ordering electronically, complete, print, and send a Cardiovascular Test Request Form (T724) with the specimen.

Useful For

Providing a genetic evaluation for patients with a personal or family history suggestive of long QT syndrome (LQTS)

 

Establishing a diagnosis of LQTS

Genetics Test Information

This test utilizes next-generation sequencing to detect single nucleotide and copy number variants in 10 genes associated with long QT syndrome (LQTS): CACNA1C, CALM1, CALM2, CALM3, KCNE1, KCNH2, KCNJ2, KCNQ1, SCN5A, and TRDN. See Targeted Genes and Methodology Details for Long QT Syndrome Gene Panel and Method Description for additional details.

 

Identification of a disease-causing variant may assist with diagnosis, prognosis, clinical management, familial screening, and genetic counseling for LQTS.

 

Prior Authorization is available for this assay.

Method Name

Sequence Capture and Targeted Next-Generation Sequencing followed by Polymerase Chain Reaction (PCR) and Sanger Sequencing.

Reporting Name

Long QT Syndrome Gene Panel

Specimen Type

Varies

Specimen Minimum Volume

1 mL

Specimen Stability Information

Specimen Type Temperature Time Special Container
Varies Varies

Clinical Information

Long QT syndrome (LQTS) is a genetic cardiac arrhythmia condition characterized by QT prolongation and T-wave abnormalities on an electrocardiogram (ECG). LQTS may result in or present with recurrent syncope, ventricular arrhythmia (commonly torsade de pointes), sudden cardiac arrest, and sudden cardiac death. Some subtypes of LQTS are also referred to as Romano-Ward syndrome (RWS).(1)

 

LQTS has a prevalence of approximately 1:2000 and is caused by loss-of-function, disease-causing variants in genes that encode cardiac ion channels or associated proteins. It is estimated that up to 75% of individuals meeting clinical diagnostic criteria for LQTS are found to harbor a disease-causing variant in one of three genes: KCNQ1, KCNH2, and SCN5A.(2) Disease-causing variants in additional genes contribute to a minority of LQTS cases.(2) In most cases, LQTS follows an autosomal dominant pattern of inheritance.

 

Jervell and Lange-Nielsen syndrome (JLNS) is a rare condition characterized by prolonged QT interval and congenital profound bilateral sensorineural hearing loss. JLNS follows an autosomal recessive inheritance pattern and is caused by homozygous or compound heterozygous disease-causing variants in either KCNQ1 or KCNE1.(1)

 

Andersen-Tawil syndrome is a rare condition characterized by prolonged QT interval, ventricular arrhythmias, episodic muscle weakness, and congenital anomalies that may include facial dysmorphology, clinodactyly, hand/foot syndactyly, short stature, and scoliosis. Andersen-Tawil syndrome follows an autosomal dominant inheritance pattern and is caused by disease-causing variants in the KCNJ2 gene.(3)

 

Timothy syndrome is a rare, systemic condition involving prolonged QT interval in association with seizures, neurodevelopmental delays, recurrent infections, and congenital anomalies that may include hand/foot syndactyly, structural heart defects, and facial dysmorphology. Timothy syndrome follows an autosomal dominant patten of inheritance and is caused by disease-causing variants in the CACNA1C gene.(4)

 

Genetic testing in LQTS is recommended and supported by multiple consensus statements to confirm the clinical diagnosis, assist with risk stratification, guide management, and identify at-risk family members. Even individuals with a normal QT interval may still be at risk for a cardiac event and sudden cardiac death and, thus, ECG analysis alone is insufficient to rule out the diagnosis and genetic testing is necessary to confirm the presence or absence of disease in at-risk family members.(1-4)

Reference Values

An interpretive report will be provided.

Interpretation

All detected variants are evaluated according to American College of Medical Genetics and Genomics recommendations.(5) Variants are classified based on known, predicted, or possible pathogenicity and reported with interpretive comments detailing their potential or known significance.

Clinical Reference

1. Alders M, Bikker H, Christiaans I: Long QT syndrome. In: Adam MP, Ardinger HH, Pagon RA, et al, eds. GeneReviews [Internet]. University of Washington, Seattle; 2003 . Updated February 8, 2018. Accessed July 27, 2022. Available at www.ncbi.nlm.nih.gov/books/NBK1129/

2. Giudicessi JR, Ackerman MJ: Genetic testing in heritable cardiac arrhythmia syndromes: differentiating pathogenic mutations from background genetic noise. Curr Opin Cardiol. 2013 Jan;28(1):63-71. doi:10.1097/HCO.0b013e32835b0a41

3. Veerapandiyan A, Statland JM, Tawil R: Andersen-Tawil syndrome. In: Adam MP, Ardinger HH, Pagon RA, et al, eds. GeneReviews [Internet]. University of Washington, Seattle; 2004. Updated June 7, 2018. Accessed July 27, 2022. Available at www.ncbi.nlm.nih.gov/books/NBK1264/

4. Napolitano C, Timothy KW, Bloise R, Priori SG: CACNA1C-related disorders. In: Adam MP, Ardinger HH, Pagon RA, et al, eds. GeneReviews [Internet]. University of Washington, Seattle; 2006. Updated February 11, 2021. Accessed July 27, 2022. Available at www.ncbi.nlm.nih.gov/books/NBK1403/

5. Richards S, Aziz N, Bale S, et al: Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015 May;17(5):405-424

Day(s) Performed

Varies

Report Available

28 to 42 days

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

81403

81406 x2

81407

81479

81479 (if appropriate for government payers)

LOINC Code Information

Test ID Test Order Name Order LOINC Value
LQTSG Long QT Syndrome Gene Panel 55146-5

 

Result ID Test Result Name Result LOINC Value
617352 Test Description 62364-5
617353 Specimen 31208-2
617354 Source 31208-2
617355 Result Summary 50397-9
617356 Result 82939-0
617357 Interpretation 69047-9
617358 Additional Results 82939-0
617359 Resources 99622-3
617360 Additional Information 48767-8
617361 Method 85069-3
617362 Genes Analyzed 48018-6
617363 Disclaimer 62364-5
617364 Released By 18771-6
Mayo Clinic Laboratories | Genetics and Genomics Additional Information:

mcl-moltechtestmenu; mcl-cardiology